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<article language="en">
	<journal>
		<journal_title>Ocean Science</journal_title>
		<journal_url>www.ocean-sci.net</journal_url>
		<issn>1812-0784</issn>
		<eissn>1812-0792</eissn>
		<volume_number>5</volume_number>
		<issue_number>4</issue_number>
		<publication_year>2009</publication_year>
	</journal>
	<doi>10.5194/os-5-635-2009</doi>
	<article_url>http://www.ocean-sci.net/5/635/2009/</article_url>
	<abstract_html>http://www.ocean-sci.net/5/635/2009/os-5-635-2009.html</abstract_html>
	<fulltext_pdf>http://www.ocean-sci.net/5/635/2009/os-5-635-2009.pdf</fulltext_pdf>
	<start_page>635</start_page>
	<end_page>647</end_page>
	<publication_date>2009-12-07</publication_date>
	<article_title content_type="html">Impact of data assimilation of physical variables on the spring bloom from TOPAZ operational runs in the North Atlantic</article_title>
	<authors>
		<author numeration="1" affiliations="1">
			<name>A. Samuelsen</name>
			<email>annette.samuelsen@nersc.no</email>
		</author>
		<author numeration="2" affiliations="1">
			<name>L. Bertino</name>
		</author>
		<author numeration="3" affiliations="1">
			<name>C. Hansen</name>
		</author>
	</authors>
	<affiliations>
		<affiliation numeration="1" content_type="html">Nansen Environmental and Remote Sensing Center, Bergen, Norway</affiliation>
	</affiliations>
	<abstract content_type="html">A reanalysis of the North Atlantic spring bloom in 2007 was produced using
the real-time analysis from the TOPAZ North Atlantic and Arctic forecasting
system. The TOPAZ system uses a hybrid coordinate general circulation ocean
model and assimilates physical observations: sea surface anomalies, sea
surface temperatures, and sea-ice concentrations using the Ensemble Kalman
Filter. This ocean model was coupled to an ecosystem model, NORWECOM
(Norwegian Ecological Model System), and the TOPAZ-NORWECOM coupled model
was run throughout the spring and summer of 2007. The ecosystem model was
run online, restarting from analyzed physical fields (result after data
assimilation) every 7 days. Biological variables were not assimilated in the
model. The main purpose of the study was to investigate the impact of
physical data assimilation on the ecosystem model. This was determined by
comparing the results to those from a model without assimilation of physical
data. The regions of focus are the North Atlantic and the Arctic Ocean.
Assimilation of physical variables does not affect the results from the
ecosystem model significantly. The differences between the weekly mean
values of chlorophyll are normally within 5–10% during the summer months,
and the maximum difference of ~20% occurs in the Arctic, also
during summer. Special attention was paid to the nutrient input from the
North Atlantic to the Nordic Seas and the impact of ice-assimilation on the
ecosystem. The ice-assimilation increased the phytoplankton concentration:
because there was less ice in the assimilation run, this increased both the
mixing of nutrients during winter and the area where production could occur
during summer. The forecast was also compared to remotely sensed
chlorophyll, climatological nutrients, and in-situ data. The results show
that the model reproduces a realistic annual cycle, but the chlorophyll
concentrations tend to be between 0.1 and 1.0 mg chl&lt;i&gt;a&lt;/i&gt;/m&lt;sup&gt;3&lt;/sup&gt; too low during
winter and spring and 1–2 mg chl&lt;i&gt;a&lt;/i&gt;/m&lt;sup&gt;3&lt;/sup&gt; too high during summer. Surface
nutrients on the other hand are generally lower than the climatology
throughout the year.</abstract>
	<references>
		<reference numeration="1" content_type="text"> % vor jede Referenz Aksnes, D. L. and Egge, J. K.: A theoretical model for nutrient uptake in phytoplankton, Marine Ecology-Progress Series, 70, 65–72, 1991. </reference>
		<reference numeration="2" content_type="text"> Aksnes, D. L., Ulvestad, K. B., Balino, B. M., Berntsen, J., Egee, J. K., and Svendsen, E.: Ecological modeling in coastal waters - towards predictive physical-chemical-biological simulation-models, Ophelia, 41, 5–36, 1995. </reference>
		<reference numeration="3" content_type="text"> Allen, J. I., Blackford, J., Holt, J., Proctor, R., Ashworth, M., and Siddorn, J.: A highly spatially resolved ecosystem model for the North West European Continental Shelf, Sarsia, 86, 423–440, 2001. </reference>
		<reference numeration="4" content_type="text"> Berline, L., Brankart, J.-M., Brasseur, P., Ourmieres, Y., and Verron, J.: Improving the physics of a coupled physical-biogeochemical model of the North Atlantic through data assimilation: Impact on the ecosystem, J. Mar. Syst., 64, 153–172, 2007. </reference>
		<reference numeration="5" content_type="text">Bertino, L. and Lisæter, K. A.: The TOPAZ monitoring and prediction system for the Atlantic and Arctic Oceans, J. Oper. Oceanogr., 2, 15–18, 2008. </reference>
		<reference numeration="6" content_type="text"> Bleck, R.: An oceanic general circulation model framed in hybrid isopycnic-Cartesian coordinates, Ocean Modell., 4, 55–88, 2002. </reference>
		<reference numeration="7" content_type="text"> Conkright, M. E., Levitus, S., O&apos;Brien, T., Boyer, T. P., Stephens, S., Johnson, D., Stathoplos, L., Baranova, O., Antonov, J., Gelfeld, R., Burney, J., Rochester, J., Forgy, C., and~World Ocean Database: Documentation and quality control, National Oceanographic Data Center, Silver Spring, MD, 1998. </reference>
		<reference numeration="8" content_type="text"> Drange, H. and Simonsen, K.: Formulation of air-sea ?uxes in the ESOP2 version of MICOM, Nansen Environmental and Remote Sensing Center, Bergen, 1996. </reference>
		<reference numeration="9" content_type="text"> Drévillon, M., Bourdalle-Badie, R., Derval, C., Drillet, Y., Lellouche, J. M., Remy, E., Tranchant, B., Benkiran, M., Greiner, E., Guinehut, S., Verbrugge, N., Garric, G., Testut, C. E., Laborie, M., Nouel, L., Bahurel, P., Bricaud, C., Crosnier, L., Dombrowsky, E., Durand, E., Ferry, N., Hernandez, F., Galloudec, O. L., Messal, F., and Parent, L.: The GODAE/Mercator-Ocean global ocean forecasting system: results, applications and prospects, J. Oper. Oceanogr., 1, 51–57, 2008. </reference>
		<reference numeration="10" content_type="text"> Ducet, N., Le Traon, P. Y., and Reverdin, G.: Global high-resolution mapping of ocean circulation from TOPEX/Poseidon and ERS-1 and-2, J. Geophys. Res.-Oceans, 105, 19477–19498, 2000. </reference>
		<reference numeration="11" content_type="text"> Engelsen, O., Hegseth, E. N., Hop, H., Hansen, E., and Falk-Petersen, S.: Spatial variability of chlorophyll-a in the Marginal Ice Zone of the Barents Sea, with relations to sea ice and oceanographic conditions, J. Mar. Syst., 35, 79–97, 2002. </reference>
		<reference numeration="12" content_type="text"> Evensen, G.: The Ensemble Kalman Filter: theoretical formulation and practical implementation, Ocean Dynam., 53, 343–367, 2003. </reference>
		<reference numeration="13" content_type="text"> Evensen, G.: Data Assimilation: The Ensemble Kalman Filter, Springer, Heidelberg, 2006. </reference>
		<reference numeration="14" content_type="text"> Friedrichs, M. A. M., Dusenberry, J. A., Anderson, L. A., Armstrong, R. A., Chai, F., Christian, J. R., Doney, S. C., Dunne, J., Fujii, M., Hood, R., McGillicuddy, D. J., Moore, J. K., Schartau, M., Spitz, Y. H., and Wiggert, J. D.: Assessment of skill and portability in regional marine biogeochemical models: Role of multiple planktonic groups, J. Geophys. Res.-Oceans, 112, CO8001, doi:10.1029/2006JC003852, 2007. </reference>
		<reference numeration="15" content_type="text"> Hansen, B. and Østerhus, S.: North Atlantic-Nordic Seas exchanges, Prog. Oceanogr., 45, 109–208, 2000. </reference>
		<reference numeration="16" content_type="text"> Hansen, C. and Samuelsen, A.: Influence of horizontal model grid resolution on the simulated primary production in an embedded primary production model in the Norwegian Sea, J. Mar. Syst., 75, 236–244, 2009. </reference>
		<reference numeration="17" content_type="text"> Hunke, E. C. and Dukowicz, J. K.: An elastic-viscous-plastic model for sea ice dynamics, J. Phys. Oceanogr., 27, 1849–1867, 1997. </reference>
		<reference numeration="18" content_type="text"> Hurlburt, H. E., Chassignet, E. P., Cummings, A. B., Kara, A. B., Metzger, E. J., Shriver, J. F., Smedstad, L. F., Wallcraft, A. J., and Barron, C. N.: Eddy-resolving global ocean prediction., in: Eddy-Resolving Ocean Modeling, edited by: Hecht, M. and Hasumi, H., Geophysical Monograph, 177, AGU, Washington DC, 2008. </reference>
		<reference numeration="19" content_type="text"> Johannessen, J. A., Le Traon, P. Y., Robinson, I., Nittis, K., Bell, M. J., Pinardi, N., and Bahurel, P.: Marine environment and security for the European area – Toward operational oceanography, B. Am. Meteorol. Soc., 87, 1081–1090, 2006. </reference>
		<reference numeration="20" content_type="text"> Large, W. G., McWilliams, J. C., and Doney, S. C.: Oceanic vertical mixing – a review and a model with a nonlocal boundary-layer parameterization, Rev. Geophys., 32, 363–403, 1994. </reference>
		<reference numeration="21" content_type="text"> Natvik, L. J. and Evensen, G.: Assimilation of ocean colour data into a biochemical model of the North Atlantic – Part 2. Statistical analysis, J. Mar. Syst., 40, 155–169, doi:10.1016/s0924-7963(03)00017-4, 2003a. </reference>
		<reference numeration="22" content_type="text"> Natvik, L. J. and Evensen, G.: Assimilation of ocean colour data into a biochemical model of the North Atlantic - Part 1. Data assimilation experiments, J. Mar. Syst., 40, 127–153, doi:10.1016/s0924-7963(03)00016-2, 2003b. </reference>
		<reference numeration="23" content_type="text"> Pasquero, C., Bracco, A., and Provenzale, A.: Impact of the spatiotemporal variability of the nutrient flux on primary productivity in the ocean, J. Geophys. Res.-Oceans, 110, CO7005, doi:10.1029/2004JC002738, 2005. </reference>
		<reference numeration="24" content_type="text"> Reynolds, R. W., Rayner, N. A., Smith, T. M., Stokes, D. C., and Wang, W.: An improved in situ and satellite SST analysis for climate, J. Climate, 15, 1609–1625, 2002. </reference>
		<reference numeration="25" content_type="text"> Sakshaug, E., Bjørge, A., Gulliksen, B., Loeng, H., and Mehlum, F.: Økosystem Barentshavet, Studio Heimdal AS, Trondheim, 1992. </reference>
		<reference numeration="26" content_type="text"> Simon, E. and Bertino, L.: Application of the Gaussian anamorphosis to assimilation in a 3-D coupled physical-ecosystem model of the North Atlantic with the EnKF: a twin experiment, Ocean Sci., 5, 495–510, 2009. </reference>
		<reference numeration="27" content_type="text"> Skogen, M. and Søiland, H.: A user&apos;s guide to NORWECOM v2.0. The NORWegian ECOlogical Model system., Institute of Marine Research, Bergen, 42~pp., 1998. </reference>
		<reference numeration="28" content_type="text"> Skogen, M. D., Svendsen, E., Berntsen, J., Aksnes, D., and Ulvestad, K. B.: Modeling the primary production in the North-Sea using a coupled 3-dimensional physical-chemical-biological ocean model, Estuar. Coast. Shelf Sci., 41, 545–565, 1995. </reference>
		<reference numeration="29" content_type="text"> Skogen, M. D. and Moll, A.: Interannual variability of the North Sea primary production: comparison from two model studies, Conti. Shelf Res., 20, 129–151, 2000. </reference>
		<reference numeration="30" content_type="text"> Skogen, M. D., Søiland, H., and Svendsen, E.: Effects of changing nutrient loads to the North Sea, J. Mar. Syst., 46, 23–38, 2004. </reference>
		<reference numeration="31" content_type="text"> Skogen, M. D., Budgell, W. P., and Rey, F.: Interannual variability in Nordic seas primary production, ICES J. Mar. Sci., 64, 889–898, 2007. </reference>
		<reference numeration="32" content_type="text"> Smith, S. L., Yamanaka, Y., Pahlow, M., and Oschlies, A.: Optimal uptake kinetics: physiological acclimation explains the pattern of nitrate uptake by phytoplankton in the ocean, Mar. Ecol. Prog. Ser., 384, 1–12, doi:10.3354/meps08022, 2009. </reference>
		<reference numeration="33" content_type="text"> Svendsen, E., Kloster, K., Farrelly, B., Johannessen, O. M., Johannessen, J. A., Campbell, W. J., Gloersen, P., Cavalieri, D., and Matzler, C.: Norwegian remote sensing experiment: Evaluation of the Nimbus 7 scanning multichannel microwave radiometer of sea ice research, J. Geophys. Res.-Oceans Atmos., 88, 2781–2791, 1983. </reference>
		<reference numeration="34" content_type="text"> Teague, W. J., Carron, M. J., and Hogan, P. J.: A comparison between the Generalized Digital Environmental Model and Levitus climtologies, J. Geophys. Res.-Oceans, 95, 7167–7183, 1990. </reference>
		<reference numeration="35" content_type="text"> Uppala, S. M., Kallberg, P. W., Simmons, A. J., Andrae, U., Bechtold, V. D., Fiorino, M., Gibson, J. K., Haseler, J., Hernandez, A., Kelly, G. A., Li, X., Onogi, K., Saarinen, S., Sokka, N., Allan, R. P., Andersson, E., Arpe, K., Balmaseda, M. A., Beljaars, A. C. M., Van De Berg, L., Bidlot, J., Bormann, N., Caires, S., Chevallier, F., Dethof, A., Dragosavac, M., Fisher, M., Fuentes, M., Hagemann, S., Holm, E., Hoskins, B. J., Isaksen, L., Janssen, P., Jenne, R., McNally, A. P., Mahfouf, J. F., Morcrette, J. J., Rayner, N. A., Saunders, R. W., Simon, P., Sterl, A., Trenberth, K. E., Untch, A., Vasiljevic, D., Viterbo, P., and Woollen, J.: The ERA-40 re-analysis, Q. J. Roy. Meteorol. Soc., 131, 2961–3012, 2005. </reference>
		<reference numeration="36" content_type="text"> Winther, N. G. and Evensen, G.: A hybrid coordinate ocean model for shelf sea simulation, Ocean Modell., 13, 221–237, 2006. </reference>
	</references>
</article>

